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BIO 200 Evolutionary Biology

The headings for the inventory of Internet resources correspond to the lecture and laboratory titles for Biology 200, Evolutionary Biology taught in the Biological Sciences Department at the State University of New York University at Buffalo. These sites have been selected to provide an inventory of sites useful for the study of evolution and evolutionary biology. They are good places to stimulate your interests in the field and to sustain your interests in the study of evolutionary biology and related disciplines.

Origins of Life

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Selection: Competition and Mutualism

  • Fun with Lichens! Discover the online world of lichens, a successful alliance between a fungus and an alga - two differenten organisms living as one body, thriving as a result of natural cooperation.
  • Mutualism Symbiotic relationships explained with an animal-plant example.
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Chordates

  • Chordata The Google gateway with some resources of importance.
  • Introduction to the Chordata From sea otters to sea squirts this site describes the animal phylum with which everyone is most intimately familiar, since it includes humans and other vertebrates. Provides links to Fossil Record of chordates, Life History of chordates, chordate Systematics , and Morphology of chordates. However, not all chordates are vertebrates. Discover why and how!
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Echinoderms

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Macroevolution

Macroevolution refers to studies of evolutionary patterns and processes that manifest themselves on time periods longer than the evolution of single species.

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Monera

  • Taxonomy Gram staining to identify bacteria.
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Plantae: Adaptations

  • Adaptations from the Scrub Community Water conservation adaptations in plants in the chaparral community.
  • Desert Plant Survival A general article describing the mechanisms plants have evolved to adapt to the harsh and extreme environments of the desert Southwest U.S.
  • Introduction to Plantae This site serves as a gateway for information about the life history and ecology, systematics, morphology, and fossil record of plants. Produced by the Museum of Paleontology at the University of California at Berkeley.
  • Life in Extreme Environments Internet links about life (plant and animal) in Earth's most extreme environments.
  • Photoreceptors A site describing how light affects plant growth and development.
  • Plant Google's plants gateway. Be sure to look at Google's other closely related gateways for Plantae and Botany .
  • Plant Adaptations Full-text essay and illustrations (microphotographs) on plants' methods of reducing transpiration rate.
  • Plant Biomes Text and illustrations on how plants survive in various environments. Other biomes with plant adaptation discussions and illustrations link to Biology of Plants site.
  • Plant Hardiness Zone Map Gardeners know when its planting time. The U. S. Department of Agriculture's Plant Hardiness Zone Map provides a recommended range in which a plant will grow well. The map identifies eleven zones according to climate: the colder the winter temperature, the lower the zone number.
  • Plants in Motion This site provides a series of time lapse videos of plants in motion (requires QuickTime software installation). Read the introductory information and scroll down to " GO TO THE MOVIES ." Video clips include: Arabidopsis, germination, elongation, photropism, gravitropism, nutation movement (natural bending and twisting), root growth, and rosette growth. Still photographs are also provided.
  • Plants in the winter Mechanisms that allow plants to survive harsh winter weather and climates. Includes link to a self-test.
  • Review and Atlas of Apaleovegetation A preliminary set of land ecosystem maps of the world since the last glacial maximum. "A set of preliminary, broad-scale ecosystem map reconstructions is presented for the world at the Last Glacial Maximum (18,000 years ago) and the early Holocene (8,000 years ago), the mid Holocene (5,000 years ago) and for comparison 'present-potential' maps that may be regarded as approximating the late Holocene vegetation distribution as it would - or might - have been without agricultural modification. The maps were produced through consultation with an extensive network of experts and a range of literature and map sources, with the final decision in each case made by the editor. Accompanying each regional map is a general background text detailing the principal sources of evidence and the major uncertainties within this."
  • The Seedy Side of Plants From this site you will " ..learn the clever ways plants use to get around, even though they are literally rooted to the spot. Discover the unique methods seeds use to travel in their quest for survival, and how they adapt to unlikely environments. Learn how controversial genetic engineering is being used to alter the natural seed production of plants." Richly illustrated and highly linked.
  • WWW Virtual Library: Botany This is a major gateway for botany and plant science.
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Plantae -- Kinds of Plants

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Protista

  • Protist Image Data This site provides links to pictures and images on representative genra of algae and protozoa, resources in protistology: online database , an inventory of online resources of "the best of the Web" on protists, including image files, texts, culture collection, nomenclature, societies, journals, experts; and a descriptive file about the Protist Data Image site.
  • Protistan Phyla In-depth descriptive Web resources on the phyla comprising the protists. Serves as a gateway for information about the life history and ecology, systematics, morphology, and fossil record of the protists. Produced by the Museum of Paleontology at the University of California at Berkeley. Click on the protist of choice for detailed information.
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Selection -- Predation and Parasitism

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Science as a Way of Knowing (The Scientific Method as A Means of Inquiry)

"It is a capital mistake to theorize before one has the data. Insensibly one begins to twist facts to suit theories, instead of theories to suit facts. "-- Sir Arthur Conan Doyle

"It is also a good rule not to put too much confidence in experimental results until they have been confirmed by theory."-- Sir Arthur Eddington

"First get your facts; then you can distort them at your leisure ."-- Mark Twain

On Being a Scientist: Responsible Conduct in Research is a handbook for conducting scientific research. It was written by the Committee on Science, Engineering and Public Policy for the National Academy of Science, the National Academy of Engineering, and the Institute of Medicine, and made available online in full-text format by the National Academy Press. This books reviews the methods and conduct of scientific inquiry. On Being a Scientist should be required reading for every science student.

The following Web sites (arranged alphabetically by Web site title) will help you to understand the purpose and function of the Scientific Method as a means of scientific inquiry and in the conduct of science:

  • The Decline of Reason? An essay by Jerre H. Lipps (Professor of Paleontology, University of California at Berkeley) providing insights for the scientific method as a tool for conducting temporary science. The essay look at the place of the scientific method in substantiating or refuting the claims postulated by religion and superstition, pseudoscience, and science. A good place to start an investigation of the science-antiscience debate, from the perspective of paleontology or paleobiology. Perspective from this site: "'We've arranged a global civilization in which most crucial elements profoundly depend on science and technology. We have also arranged things so that almost no one understands science and technology. This is a prescription for disaster.' Carl Sagan, 1996. (Surveys have shown that 75-95% of the U.S. population is scientifically illiterate; of most developed countries, we are at the bottom)"
  • Guidelines for Evaluating and Expressing the Uncertainty of NIST Measurement Results Uncertainty is a part of science. "This is a brief summary of the method of evaluating and expressing uncertainty in measurement adopted widely by U.S. industry, companies in other countries, NIST [National Institute for Standards and Technology], its sister national metrology institutes throughout the world, and many organizations worldwide."
  • The Myth of the Magical "Scientific Method" Is there only one means of scientific inquiry? Are there "other" methods that work in science?
  • Richard Feynman Discusses the Scientific Method 'During the Middle Ages there were all kinds of crazy ideas, such as that a piece of rhinoceros horn would increase potency. Then a method was discovered for separating the ideas - which was to try one to see if it worked, and if it didn't work, to eliminate it. This method became organized, of course, into science." This address is entitled, "Cargo Cult Science" and is an adaptation from Feynman's Caltech commencement address given in 1974 and excerpted from the book "Surely You're Joking, Mr. Feynman!"
  • The Scientific Method This site provides a detailed examination of the Scientific Method and its applications. Discussions on the conduct of science are also provided. A very good source to examine the mechanics of "how" and "why" scientific inquiry is done the way it has been and is done.
  • The Scientific Method A slide show and outline.
  • The Scientific Method Another detailed explanation of how scientific inquiry is undertaken. This site provides further analyses of the stages in the research process and how hypothesis are formulated. The general outline of the research article is presented as a further demonstration of the scientific method as reflected in scientific literature.
  • Scientific Method Answers.com takes a look at the scientific method.
  • Scientific Method Slide Show A 21-slide presentation on the basic structure of the Scientific Method.
  • The Scientific Method - Elegant Experiments This Web page introduces students to application of the scientific method, providing descriptions of how several major biological discoveries ("Experiments that Inspire") issues were discovered, explained or resolved.
  • Steps in the Scientific Method A schematic representation of the Scientific Method.
  • Studying Cells Tutorial -- The Scientific Method The Scientific Method applied to cell biology.
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Selection -- Sexual and Kin

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Viruses

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DNA Fingerprinting

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Embryology

A special SEL Biology Site, Embryology and Developmental Biology has been created for a brief listing of Web based resources.

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Species Formation

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Animalia: Cambrian Explosion

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Arthropods

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Seed Plants

See also sites listed in the Biology - Botany, Forestry, and Plant Science Website

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Adaptation

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Plantae -- Flowering Plants and Pollinators

  • Flowering plants -- a comprehensive gateway to flowering plants.
  • Flowering Plant Gateway Classification of flowering plants follows known evolutionary lines or morphology suggesting possible relationships. This site provides paths for the exploration or comparison of three major systems of flowering plant classification: Cronquist, Takhtajan, Thorn. An additional section describes the classification elements of the APG (Angiosperm Phylogeny Group). Users can enter a family name and link to additional information on that family and related taxa. The site contains many high quality images and comprehensive and expansive amounts of information, including DNA sequence information and ethnobotany data and resources. Site is maintained by Dr. Hugh Wilson at Texas A&M University's Bioinformatics Working Group.
  • Introduction to the Anthophyta -- The Flowering Plants Links to descriptive resources on the fossil record of flowering plants and the life history and systematics, systematics, and morphology of flowering plants. A second access point to this site, including links to Paleoherbs, Aristolochiales, Piperales, and Monocotyledonae (Monocots).
  • Monocots versus Dicots - Introduces the two major classes of flowering plants.
  • Fun Facts about Fungi General information about fungi, including some interesting things about mushrooms.
  • Introduction to the Fungi (Of athlete's foot, champignons, and beer. . . ) Serves as a gateway for information about the life history and ecology, systematics, morphology, and fossil record of fungi. Produced by the Museum of Paleontology at the University of California at Berkeley.
  • MykoWeb: Mushrooms, Fungi, Mycology This site was developed to serve as an introduction to the science of mycology (the study of fungi). It is produced and maintained by Michael Wood a past president of the Mycology Society of San Francisco.
  • Tom Volk's Fungi This is an expansive site for information and Internet resources on and about fungi. Tom Volk is an Associate Professor in the Department of Biology at the University of Wisconsin-La Crosse (he teaches several courses on mycology). His Kingdom of Fungi site is a detailed overview of this phylum. One of many files Dr. Volk has constructed is an impressive site of more than 1,000 JPEG images of fungi (scroll down his home page to the message about this gopher gallery of images and click to the images).
  • Fungi Online -- a brief but useful guide to fungi.

Mollusks

Special Note:This section on mollusks includes a special section on Zebra Mussels, a non-indigenous species introduced into the Great Lakes and now spreading through out other freshwater ecosystems in North America.

Zebra Mussels -- Of Local Importance and Interest

Biochemistry and Molecular Biology

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Natural Selection & Genetic Drift

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Mutations

  • Human Gene Mutation Data Base "The Human Gene Mutation Database (HGMD), maintained at the Institute of Medical Genetics in Cardiff, represents a comprehensive core collection of data on germline mutations underlying human inherited disease. Thus, HGMD comprises published single base-pair substitutions in coding, regulatory and splicing-relevant regions of human nuclear genes as well as deletions, duplications, insertions, repeat expansions and `indels', plus a number of complex rearrangements not covered by the above categories. Somatic gene mutations and mitochondrial genome mutations are not included." "The Human Gene Mutation Database" Nucleic Acids Research (26:285-287, 1998)
  • Human Genome Project Information Resources for the Human Genome Project, including links to mutations and genetic disorders.
  • Mutation A gateway from Answers.com on a variety of mutations and types of mutations. Be sure to check "Related Topics" for more information.
  • Mutation A nice illustration of three types of mutation.
  • Nomenclature for the description of sequence variations A scholarly discussion about the nomenclature and designation of a terminology for many different types of genetic sequence variations.
  • OMIM - Online Mendelian Inheritance in Man This is a major frequently updated compilation of all genetic diseases and disorders. It is prepared for the National Center for Biotechnology Information (NCBI). Ask your biological sciences librarian for help in finding related sequence data, chromosome maps, etc. for a specific disease or disorder.
  • Skin Disease Mutation Data Base This is a major technical database for the clinical and laboratory confirmation of skin mutations. NOT for the casual user.
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Animalia: Primates

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Population Genetics

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Prokaryote Evolution

  • Introduction to the Bacteria This is another major gateway site from the University of California Museum of Paleontology with many useful links, including a link to a rather unique type of prokaryotic bacteria, the Archaea , or extremophile bacteria living at the very fringes of physiological extremes.
  • Prokaryotes A problem set and tutorial from the University of Arizona's Biology Project, "Cell Biology -- Prokaryotes, Eukaryotes, & Viruses Tutorial."
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Eukaryote Evolution

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Cells and Cellular Biology

  • Basic Genetics and Cell Biology A nice education about cells and genetics from the National Biological Information Infra-structure.
  • Cell Biology A series of problem sets and tutorials that introduce the student to the cell as the fundamental unit of life
  • Cell Biology A major gateway from the Internet Public Library.
  • Cell & Molecular Biology Online This site serves as a general resource for the biology student and many levels. There are many links for those interested in furtherin g their understanding of cell and molecular biology.
  • Dictionary of Cell Biology "The Dictionary of Cell Biology was first published in 1989, and has since been translated into several languages. It is intended to provide quick access to easily-understood and cross-referenced definitions of terms frequently encountered in reading the modern biology literature. This server contains the text of the Second edition, published in April 1995, together with enhancements, hypertext links. a new graphical interface provides a pictorial means to examine the contents of cells and their functions.
  • Mitosis and Cells A general overview of a "slide show," including nice animations (be sure to click to next slide!!)
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Classification, Phylogenetics, Systematics

  • Cladograms of Groups of Living Organisms Three classification schemes are presented for green plants, land plants, and animals.
  • Evolution and Systematics A useful paper on the systematics in the context of evolution.
  • Green Plant Phylogeny A resource coordination group to help expand our understanding of plant diversity.
  • Implications of Cladistics-Understanding Branching Diagrams Nice discussion about organizing information related to phylogenetic relationships.
  • An Introduction to Cladistics This module provides a brief introduction to the philosophy, methodology, and implications of cladistic analysis.
  • Introductory Glossary of Cladistic Terms Great resource for the nomenclature of cladistics and systematics.
  • PHYLIP PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees).
  • Phylogenetic Analysis Computer Programs This is a new site, under construction. So come back and visit it periodically. It "is a list of some programs we know of that perform some sort of phylogenetic analysis, or which we think might be useful to phylogeneticists."
  • Phylogenetic Resources A major, comprehensive site for phylogenetics: "Phylogenetics is that field of biology which deals with identifying and understanding the relationships between the many different kinds of life on earth. This includes methods for collecting and analyzing data, as well as interpretations of those results as new biological information. We have provided the following list of sites useful for scientists in this field, since there is no such list currently on major directories."
  • Phylogenetics Phylogenetics in four websites and an extensive bibliography.
  • The Phylogeny of Life The ancestor/descendant relationships which connect all organisms that have ever lived. "The context of evolutionary biology is phylogeny, the relationships between groups of organisms as expressed as ancestor/descendant relationships." The producers of this site express these relationships in diagrams cal led cladograms, which are like genealogies of species.
  • Taxonomy A Google gateway.
  • What is Cladistics This site starts to answer the question.
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Charles Darwin

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The Fossil Record

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Biodiversity and Endangered Species

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Genetics

  • DNA Answers.com gateway to the "Chemical of Life," DNA.
  • Genetics Google's genetic gateway.
  • Genetics and Genomics A gateway to human health issues related to genetics, compile by the U.S. Centers for Disease Control and Prevention. Lots of links.
  • Genetics Home Reference A general gateway site to genetics.
  • Internet Public Library: Genetics A compilation of web sites covering a broad spectrum of genetics issues and topics.
  • Mendel Web "Mendel Web is a teaching and learning resource built upon Gregor Mendel's famous paper of 1865, and designed to show how primary texts can be used to anchor resources that take advantage of hypertext, the connectivity of the World Wide Web, and the collaborative possibilities of the Internet, to contribute to a distributed electronic curriculum." An amazingly rich site, developed to serve as an educational resource for teachers and students interested in the origins of classical genetics, introductory data analysis, elementary plant science, and the history and literature of science. Be sure to look at the Mendel Web Collaborative Hypertext Homepage , an interactive site where you can comment on Mendel's ideas.
  • Virtual Library on Genetics A major gateway site.
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General Evolution & Evolutionary Biology Sites

  • A. P. Biology Page Don't let the "level" of this site sway you. There are some extremely good links found on this gateway site.
  • Biology and Evolutionary Theory -- FAQs Frequently asked questions (FAQs) and the answers about evolution.
  • Biology Links: Evolution Another general gateway.
  • Browsable Glossary A great glossary of terms with many linking to much more details and resources.
  • Center for Ecology, Evolution, and Behavior The Center supports education and research on the interactions between organisms and their environment from an evolutionary (historical) perspective.
  • Creationism vs. Evolution Contemporary writings on the debate -- an extensive list of electronic books and papers.
  • Defense of Evolution Relates to the Evolution-Creationism debate.
  • Evolution This is Google's gateway to evolution. Be sure to explore the various categories list, as well as this site.
  • Evolution This is an interesting gateway site. Be sure to look at other closely related sites listed under the "Related Topics" section on the right.
  • Evolution This is a major Evolutionary Biology gateway site. WGBH, the PBS affiliate in Boston, is responsible for many of the highly acclaimed science programming (and subsequent DVD/VHS releases, books, etc.). This is the companion website to the 2001 program, Evolution: The Triumph of an Idea (UB has the companion book in print in the Undergraduate Library's Book Collection, Capen ground floor [QH361.Z48 2001] and as a book on tape in the Capen Multimedia Center on the 2nd floor of Capen Libraries [QH361.Z48 2001b]. This site has MANY links to specific subtopics and links to many useful sites. You are encouraged to EXPLORE THIS SITE .
  • Evolution (Biosciences) Resources inventoried at the World Wide Web Virtual Library at Harvard University.
  • Evolution: Theory and History A GREAT site for exploring the biographies of scientific thought related to evolution through history.
  • Evolutionary Biology Resources Another general gateway site.
  • The Evolutionary Tales: Rhyme and Reason on Creation/Evolution Provides links related to the Evolution-Creationism debate.
  • EvoTutor For the more interested and curious student, this site has some very interesting simulations of things related to evolutionary biology.
  • Explore the Tree of Life Treat the title as a command and you'll find some nice resources.
  • Five Major Misconceptions about Evolution This site provides additional resources related to the Evolution-Creationism debate.
  • Institute for Creation Research This site provides resources related to the religious aspects of creationism.
  • Issues in Evolution This is a site provided by the American Institute of Biological Sciences (hint: student membership due would be a nice birthday gift to receive). It deals with the controversy about the teaching of evolution in schools, colleges, and universities.
  • Links of Interest to Evolutionary Biologists Links from Evolution, Biology 205, University of Rochester, will take you to a listing of links that are all somewhat related to evolutionary biology:full texts of Darwin's works, online museums, bulletin boards, research databases, libraries, research labs and more.
  • Mechanisms: The Processes of Evolution General overview of evolution. Top bar is a pointer to more detailed descriptions.
  • Misconceptions Decribes some of the major issues between creationism, evolution and the study of evolution.
  • Secular Web A searchable site for resources related to the Evolution-Creationism debate. The word "evolution" generates nearly 800 individual resources.
  • The Talk: Origins Archive -- Exploring the Creation/Evolution Controversy A multidisciplinary focus of resources including scientific, technical, cultural, religious links on the topic of evolution. resources include links in anthropology, ecology, evolution (molecular, genetic, population), history, paleontology. Sources categorized by Pro- and Con-positions for both evolution and creationism, and a category for general science resources related to the academic study of evolution. A cyberchest of treasures!
  • The Museum of Paleontology An incredible site for students and faculty, providing online exhibits, educational resources, and compilations of scientific sites for the study of evolution.
  • UCMP Glossary Another glossary of evolutionary biology terms and concepts.
  • Understanding Evolution This is a nice overview of Evolution with links to some interesting resources.
  • Understanding Evolution A rather interesting online tutorial about evolution from a teaching perspective.
  • Virtual Library: Biosciences Comprehensive inventories of Internet resources related to biological topics.
  • The World of Richard Dawkins An eclectic array of Internet resources on the topics of evolution, genetics, natural history, and related evolutionary biology.
  • WWW Resource Supplements for College Introductory Biology This is an extremely useful gateway site for an introductory-level undergraduate biology course.
  • Yahoo: Biology - Evolution An inventory of resources from the biologist's perspective.
  • Yahoo: Creation/Evolution An inventory or Internet resources looking at the debate of Creationism vs. Evolution.
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Ecology and Ecological Aspects

Ecology Google's gateway. Check the extensive list of related categories, including Evolutionary Ecology.

Animalia: Humans

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Anatomy and Embryology

  • Anatomy and Physiology A major anatomy gateway. Basic Embryology A basic guide following the embryonic development of humans from fertilization through birth (38 weeks). Extremely useful graphics and pointers for examination of the embryo. Only the overview chapter is available for public viewing at this time (10-99). Darwin Evidence: Embryology A series of lecture notes and exercises to demonstrate the relationships between phylogeny and ontogeny. Darwin's Evidence -- Embryology Lecture notes and class exercise from a evolution class at New York University. Developmental Biology A series of problem sets and tutorials that review the basics of embryology and developmental biology. From "The Biology Project" at the university of Arizona. includes links to other embryology sites. Dissections A list of Internet resources compiled by SEL Biological Sciences Librarian .Functional Morphology and Evolution A brief list of morphology resources focusing on evolution .Mammalian Morphology and Evolution Laboratory An interesting in-depth discussion about evolutionary aspects of morphology in mammals. Vertebrate Flight Examines the physics, mechanisms, and evolution of flight in vertebrate organisms.
  • Virtual Embryo An expansive site with many high-quality links to embryology and developmental biology. While designed more for the advanced student, the undergraduate biology major will find this site extremely useful. Begins with gametogensis. Includes a developmental biology tutorial. Species for which developmental biology is provided: amphibians, fish, sea urchins, nematodes, chick, fruit fly, mouse, and humans.
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Variability & Diversity

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Animalia: Birds

  • Introduction to the Aves: the Birds The University of California at Berkeley's UC Museum of Paleontology is one of the most comprehensive sources of information related to evolutionary biology from a life science perspective. Major groups of plants and animals are represented, and have links to resources on the fossil record, like history and ecology, systematics, and morphology for each organism listed. There are typically other very good UCMP and external sources linked from these pages, such as this one for the Aves or birds. Other UCMP links include the evolution of bird flight , the vertebrate flight museum , ornithological collections .
  • Birder home page Bird watching is the largest nonconsumptive outdoor sport, and contributes greatly to our understanding of birds. This Birder Home Page is a great place to look for birding information.
  • Electronic Resources on Ornithology This is a great gateway site on ornithology, the scientific study of birds.
  • Beautiful Birds - Masterpieces from the Hill Ornithology Collection, Cornell University Library Cornell University is one of the world's largest and most prestigious research universities for ornithology. This site provides a unique library gateway to this topic.
  • Birds Birds have long been a favorite topic of the Public Broadcast System (PBS). Here is one of their entry sites to birds.
  • Winged Migration One of the most widely watched documentaries ever, this DVD shows bird migration in a way never before depicted. Not only is the scientific wonder of bird migration shown, but so are the artistic and inspirational aspects of nature's cycles portrayed. This DVD is available in the UB Libraries' Capen Multimedia Center (2nd floor Capen Libraries). DVD 391: QL 698.9 W553 2003
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Animalia: Dinosauria

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Animalia: Mammals

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Acquired Characteristics

Preface : Acquired characteristics are non-hereditary changes in function, structure, or form in living organisms resulting from response to environmental conditions. Such acquired characteristics result from a wide variety of factors such as mutilation, disease, use and disuse (atrophy). The idea that such characteristics are passed from one generation to another was proposed by Jean-Baptiste Lamarck in 1809. Subsequent decades of research in genetics have rejected Lamarck"s theory. The following websites provide a general overview about acquired characteristics beginning with several online biographers about Lamarck.

Bibliographies :

Adaptations to Land

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Extinction

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Vertebrates (origins)

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Animal Kingdom

Many of the links to sites in this section can be used to locate more specific information about other animal groups listed here.

Microscope

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Sex and Love

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War and Hate

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Fungi

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Invertebrates

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Skeletal Homology

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Fun Stuff

  • Darwin Awards There is only one really true and official Darwin Awards of foolhardy legends and really stupid things people have done to get themselves killed or worse, survived to live and be humiliated by their actions.
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